40 lines
693 B
Plaintext
40 lines
693 B
Plaintext
|
/** blastp all against all */
|
||
|
|
|
||
|
|
process BLAST_MAKEBLASTDB {
|
||
|
|
|
||
|
|
label 'blast'
|
||
|
|
|
||
|
|
input:
|
||
|
|
val species
|
||
|
|
path proteome
|
||
|
|
|
||
|
|
output:
|
||
|
|
path 'db.phr'
|
||
|
|
path 'db.pin'
|
||
|
|
path 'db.psq'
|
||
|
|
|
||
|
|
script:
|
||
|
|
"""
|
||
|
|
makeblastdb -in "${proteome}" -dbtype prot -out 'db' -title "${species}"
|
||
|
|
"""
|
||
|
|
}
|
||
|
|
|
||
|
|
process BLAST_BLASTP {
|
||
|
|
|
||
|
|
label 'blast'
|
||
|
|
|
||
|
|
input:
|
||
|
|
val species
|
||
|
|
path proteome
|
||
|
|
path 'db.phr'
|
||
|
|
path 'db.pin'
|
||
|
|
path 'db.psq'
|
||
|
|
output:
|
||
|
|
path "${species}.all-against-all.blastp.tsv"
|
||
|
|
|
||
|
|
script:
|
||
|
|
"""
|
||
|
|
blastp -query "${proteome}" -db 'db' -outfmt '6' -out "${species}.all-against-all.blastp.tsv"
|
||
|
|
"""
|
||
|
|
}
|