Update KaKs workflow config

2025-01-18 15:53:11 +01:00 · 2025-01-18 15:53:11 +01:00 · 33e898da2e
parent 6371ed0086
commit 33e898da2e
1 changed files with 26 additions and 0 deletions
--- a/workflow/KaKs/nextflow.config
+++ b/workflow/KaKs/nextflow.config
@ -0,0 +1,26 @@
+params {
+    families = "${baseDir}/../../tmp/Glycine_max_Blastp_filtered_coverage30_identity30.mcl.tsv"
+    proteome = "${baseDir}/../../tmp/proteome_filtered.fa"
+    cds = "${baseDir}/../../../data/Glycine_max.Glycine_max_v2.1.cds.all.fa.gz"
+    species = "Glycine_max"
+    results = "results"
+}
+
+profiles {
+
+    conda {
+        conda.enabled = true
+
+        process {
+            withLabel: paml {
+                conda = "$baseDir/conda/paml.yaml"
+            }
+            withLabel: pal2nal {
+                conda = "$baseDir/conda/pal2nal.yaml"
+            }
+            withLabel: clustalw {
+                conda = "$baseDir/conda/clustalw.yaml"
+            }
+        }
+    }
+}