53 lines
925 B
Plaintext
53 lines
925 B
Plaintext
/** blastp all against all */
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process BLAST_MAKEBLASTDB {
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label 'blast'
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input:
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val species
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path proteome
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output:
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path 'db.phr'
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path 'db.pin'
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path 'db.psq'
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script:
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"""
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makeblastdb -in "${proteome}" -dbtype prot -out 'db' -title "${species}"
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"""
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}
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process BLAST_BLASTP {
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label 'blast'
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input:
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val species
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path proteome
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path 'db.phr'
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path 'db.pin'
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path 'db.psq'
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output:
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path "${species}.all-against-all.blastp.tsv"
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script:
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"""
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blastp -query "${proteome}" -db 'db' -outfmt '6' -num_threads 7 -out "${species}.all-against-all.blastp.tsv"
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"""
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}
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workflow BLAST_ALL_AGAINST_ALL {
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take:
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proteome
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main:
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BLAST_MAKEBLASTDB(params.species, proteome)
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BLAST_BLASTP(params.species, proteome, BLAST_MAKEBLASTDB.out)
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emit:
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BLAST_BLASTP.out
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}
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