sequence-algorithms/figures/part2/needle.tex

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\documentclass[tikz]{standalone}
\usepackage{luacode}
\usepackage{tikz}
\begin{document}
\begin{tikzpicture}
\newcommand{\seqone}{TGCATA}
\newcommand{\seqtwo}{ATCTGAT}
\begin{luacode}
local needle = require("needle")
seq1 = \luastring{\seqone}
seq2 = \luastring{\seqtwo}
local tikz_code = needle.draw(seq1, seq2)
tex.print(tikz_code)
\end{luacode}
\end{tikzpicture}
\end{document}