From 6f7c27d62ee95b2de5091348117da738a188fb4b Mon Sep 17 00:00:00 2001
From: Samuel ORTION <samuel.ortion@orange.fr>
Date: Thu, 25 Aug 2022 11:39:45 +0200
Subject: [PATCH] utils: Add a script replacing birdnet_miner in it work to
 update the database according to all files in CHUNK_FOLDER/out

---
 ...synchronize_model_outputs_with_database.sh | 35 +++++++++++++++++++
 1 file changed, 35 insertions(+)
 create mode 100644 utils/synchronize_model_outputs_with_database.sh

diff --git a/utils/synchronize_model_outputs_with_database.sh b/utils/synchronize_model_outputs_with_database.sh
new file mode 100644
index 0000000..d2951d8
--- /dev/null
+++ b/utils/synchronize_model_outputs_with_database.sh
@@ -0,0 +1,35 @@
+#! /usr/bin/env bash
+# Extract observations from a model output folder
+#
+set -e
+# set -x
+
+DEBUG=${DEBUG:-1}
+debug() {
+    [[ $DEBUG -eq 1 ]] && echo "$@"
+}
+if [[ -f ./config/birdnet.conf ]]; then
+    source ./config/birdnet.conf
+else 
+    debug "./config/birdnet.conf does not exist"
+    exit 1
+fi
+if [[ ! -d ${CHUNK_FOLDER} ]]; then
+    debug "CHUNK_FOLDER ${CHUNK_FOLDER} does not exist"
+    exit 1
+fi
+
+model_outputs() {
+    ls ${CHUNK_FOLDER}/out/*/model.out.csv
+}
+
+main() {
+    # # Remove all junk observations
+    # ./daemon/birdnet_clean.sh
+    # Get model outputs
+    for model_output in $(model_outputs); do
+        ./daemon/birdnet_output_to_sql.sh "$model_output"
+    done
+}
+
+main
\ No newline at end of file