Update
This commit is contained in:
parent
366c732998
commit
03f3efd668
18
report.org
18
report.org
|
@ -180,22 +180,26 @@ Another objective of my internship will be to port FTAG Finder on a workflow man
|
||||||
We will have to make a choice for the tool we will use.
|
We will have to make a choice for the tool we will use.
|
||||||
The two main options being Snakemake and Nextflow. Snakemake is a python powered workflow manager based on rules /à la/ GNU Make [cite:@kosterSnakemakeScalableBioinformatics2012]. Nextflow is a groovy powered workflow manager, which rely on the data flows paradigm [cite:@ditommasoNextflowEnablesReproducible2017]. Both are widely used in the bioinformatics community, and their use have been on the rise since they came out in 2012 and 2013 respectively [cite:@djaffardjyDevelopingReusingBioinformatics2023].
|
The two main options being Snakemake and Nextflow. Snakemake is a python powered workflow manager based on rules /à la/ GNU Make [cite:@kosterSnakemakeScalableBioinformatics2012]. Nextflow is a groovy powered workflow manager, which rely on the data flows paradigm [cite:@ditommasoNextflowEnablesReproducible2017]. Both are widely used in the bioinformatics community, and their use have been on the rise since they came out in 2012 and 2013 respectively [cite:@djaffardjyDevelopingReusingBioinformatics2023].
|
||||||
|
|
||||||
#+begin_export html
|
|
||||||
<h3>Bibliography</h3>
|
|
||||||
#+end_export
|
|
||||||
|
|
||||||
#+print_bibliography:
|
|
||||||
|
|
||||||
#+begin_export latex
|
#+begin_export latex
|
||||||
\flstop
|
\flstop
|
||||||
#+end_export
|
#+end_export
|
||||||
|
|
||||||
|
* References
|
||||||
|
:PROPERTIES:
|
||||||
|
:UNNUMBERED: t
|
||||||
|
:END:
|
||||||
|
|
||||||
|
#+begin_export latex
|
||||||
|
\printbibliography[heading=none]
|
||||||
|
#+end_export
|
||||||
|
|
||||||
#+begin_export latex
|
#+begin_export latex
|
||||||
\cleartoleftpage
|
\cleartoleftpage
|
||||||
\clearpairofpagestyles
|
\clearpairofpagestyles
|
||||||
#+end_export
|
#+end_export
|
||||||
|
|
||||||
** Summary
|
|
||||||
|
* Summary
|
||||||
:PROPERTIES:
|
:PROPERTIES:
|
||||||
:UNNUMBERED: t
|
:UNNUMBERED: t
|
||||||
:END:
|
:END:
|
||||||
|
|
BIN
report.pdf (Stored with Git LFS)
BIN
report.pdf (Stored with Git LFS)
Binary file not shown.
|
@ -52,6 +52,8 @@
|
||||||
natbib=true
|
natbib=true
|
||||||
]{biblatex}
|
]{biblatex}
|
||||||
|
|
||||||
|
\renewcommand\bibname{References}
|
||||||
|
|
||||||
\RequirePackage{doi}
|
\RequirePackage{doi}
|
||||||
\RequirePackage{xurl}
|
\RequirePackage{xurl}
|
||||||
\RequirePackage{orcidlink}
|
\RequirePackage{orcidlink}
|
||||||
|
@ -101,6 +103,14 @@
|
||||||
\renewcommand{\Gls}[1]{{\hypersetup{hidelinks}%
|
\renewcommand{\Gls}[1]{{\hypersetup{hidelinks}%
|
||||||
\oldGls{#1}}}%
|
\oldGls{#1}}}%
|
||||||
|
|
||||||
|
\let\oldglspl=\glspl
|
||||||
|
\renewcommand{\glspl}[1]{{\hypersetup{hidelinks}%
|
||||||
|
\oldglspl{#1}}}%}
|
||||||
|
|
||||||
|
\let\oldGlspl=\Glspl
|
||||||
|
\renewcommand{\Glspl}[1]{{\hypersetup{hidelinks}%
|
||||||
|
\oldGlspl{#1}}}%}
|
||||||
|
|
||||||
|
|
||||||
%\renewcommand*{\glstextformat}[1]{\begingroup\hypersetup{hidelinks}#1\endgroup}
|
%\renewcommand*{\glstextformat}[1]{\begingroup\hypersetup{hidelinks}#1\endgroup}
|
||||||
%\renewcommand*{\glsdohyperlink}[2]{%
|
%\renewcommand*{\glsdohyperlink}[2]{%
|
||||||
|
|
Loading…
Reference in New Issue