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Samuel Ortion 2024-04-18 13:17:51 +02:00
parent 366c732998
commit 03f3efd668
Signed by: sortion
GPG Key ID: 9B02406F8C4FB765
3 changed files with 25 additions and 11 deletions
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18
report.org
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@ -180,22 +180,26 @@ Another objective of my internship will be to port FTAG Finder on a workflow man
We will have to make a choice for the tool we will use. We will have to make a choice for the tool we will use.
The two main options being Snakemake and Nextflow. Snakemake is a python powered workflow manager based on rules /à la/ GNU Make [cite:@kosterSnakemakeScalableBioinformatics2012]. Nextflow is a groovy powered workflow manager, which rely on the data flows paradigm [cite:@ditommasoNextflowEnablesReproducible2017]. Both are widely used in the bioinformatics community, and their use have been on the rise since they came out in 2012 and 2013 respectively [cite:@djaffardjyDevelopingReusingBioinformatics2023]. The two main options being Snakemake and Nextflow. Snakemake is a python powered workflow manager based on rules /à la/ GNU Make [cite:@kosterSnakemakeScalableBioinformatics2012]. Nextflow is a groovy powered workflow manager, which rely on the data flows paradigm [cite:@ditommasoNextflowEnablesReproducible2017]. Both are widely used in the bioinformatics community, and their use have been on the rise since they came out in 2012 and 2013 respectively [cite:@djaffardjyDevelopingReusingBioinformatics2023].
#+begin_export html
<h3>Bibliography</h3>
#+end_export
#+print_bibliography:
#+begin_export latex #+begin_export latex
\flstop \flstop
#+end_export #+end_export
* References
:PROPERTIES:
:UNNUMBERED: t
:END:
#+begin_export latex
\printbibliography[heading=none]
#+end_export
#+begin_export latex #+begin_export latex
\cleartoleftpage \cleartoleftpage
\clearpairofpagestyles \clearpairofpagestyles
#+end_export #+end_export
** Summary
* Summary
:PROPERTIES: :PROPERTIES:
:UNNUMBERED: t :UNNUMBERED: t
:END: :END:

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report.pdf (Stored with Git LFS)
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12
sty/lamme2024.sty
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@ -50,7 +50,9 @@
citestyle=authoryear-comp, citestyle=authoryear-comp,
backend=biber, backend=biber,
natbib=true natbib=true
]{biblatex} ]{biblatex}
\renewcommand\bibname{References}
\RequirePackage{doi} \RequirePackage{doi}
\RequirePackage{xurl} \RequirePackage{xurl}
@ -101,6 +103,14 @@
\renewcommand{\Gls}[1]{{\hypersetup{hidelinks}% \renewcommand{\Gls}[1]{{\hypersetup{hidelinks}%
\oldGls{#1}}}% \oldGls{#1}}}%
\let\oldglspl=\glspl
\renewcommand{\glspl}[1]{{\hypersetup{hidelinks}%
\oldglspl{#1}}}%}
\let\oldGlspl=\Glspl
\renewcommand{\Glspl}[1]{{\hypersetup{hidelinks}%
\oldGlspl{#1}}}%}
%\renewcommand*{\glstextformat}[1]{\begingroup\hypersetup{hidelinks}#1\endgroup} %\renewcommand*{\glstextformat}[1]{\begingroup\hypersetup{hidelinks}#1\endgroup}
%\renewcommand*{\glsdohyperlink}[2]{% %\renewcommand*{\glsdohyperlink}[2]{%