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lamme2024-scientific-project
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feat: Add some colors and title formatting 

- Hide links in glossary entries
This commit is contained in:
Samuel Ortion 2024-04-17 08:07:39 +02:00
parent 69b607afc6
commit 1bcb211e40
3 changed files with 77 additions and 10 deletions
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2
report.org
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@ -33,7 +33,7 @@
| segment_duplcation | segment duplication | Long stretches of DNA sequences with high identity score | | segment_duplcation | segment duplication | Long stretches of DNA sequences with high identity score |
| retroduplication | retroduplication | Duplication of a gene through retro-transcription of its RNA transcript | | retroduplication | retroduplication | Duplication of a gene through retro-transcription of its RNA transcript |
| autopolyploidisation | autopolyploidisation | Polyploidisation within the same species | | autopolyploidisation | autopolyploidisation | Polyploidisation within the same species |
| allopolyploidisation | allopolyploidisation | Polyploidisation with genetic material comming from a diverged species | | allopolyploidisation | allopolyploidisation | Polyploidisation with genetic material coming from a diverged species |
| polyspermy | polyspermy | Fertilization of an egg by more than one sperm | | polyspermy | polyspermy | Fertilization of an egg by more than one sperm |
| segment_duplication | segment duplication | DNA sequences present in multiple locations within a genome that share high level of sequence identity | | segment_duplication | segment duplication | DNA sequences present in multiple locations within a genome that share high level of sequence identity |
| subfunctionalization | subfunctionalization | Fate of a duplicate gene which gets a part of the original gene function, the function being shared among multiple duplicates | | subfunctionalization | subfunctionalization | Fate of a duplicate gene which gets a part of the original gene function, the function being shared among multiple duplicates |

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report.pdf (Stored with Git LFS)
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81
sty/lamme2024.sty
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@ -12,9 +12,17 @@
\RequirePackage{float} \RequirePackage{float}
\RequirePackage{caption} \RequirePackage{caption}
\RequirePackage{subcaption} \RequirePackage{subcaption}
\RequirePackage{xcolor}
\RequirePackage{csquotes} \RequirePackage{csquotes}
\RequirePackage[english]{babel} \RequirePackage[english]{babel}
% Colors
\RequirePackage{xcolor}
\definecolor{lamme2024-blue}{HTML}{008682}
\colorlet{primary}{lamme2024-blue}
\colorlet{primaryLink}{primary!60!blue}
\colorlet{primaryCite}{red!70!primary}
% Math % Math
\RequirePackage{amsmath} \RequirePackage{amsmath}
\RequirePackage{amsthm} \RequirePackage{amsthm}
@ -47,7 +55,8 @@
\RequirePackage[ \RequirePackage[
nameinlink, nameinlink,
noabbrev noabbrev
]{cleveref} ]{cleveref}
\usepackage[ \usepackage[
@ -59,16 +68,41 @@
\setabbreviationstyle[acronym]{long-short} \setabbreviationstyle[acronym]{long-short}
\usepackage{hyperref} \usepackage{hyperref}
\hypersetup{
colorlinks=true,
urlcolor=primaryLink,
linkcolor=primaryLink,
anchorcolor=primaryLink,
citecolor=primaryCite
}
\newcommand*{\glsplainhyperlink}[2]{%
\begingroup%
\hypersetup{hidelinks}%
\hyperlink{#1}{#2}%
\endgroup%
}
\let\oldgls=\gls
\renewcommand{\gls}[1]{{\hypersetup{hidelinks}%
\oldgls{#1}}}%
\let\oldGls=\Gls
\renewcommand{\Gls}[1]{{\hypersetup{hidelinks}%
\oldGls{#1}}}%
%\renewcommand*{\glstextformat}[1]{\begingroup\hypersetup{hidelinks}#1\endgroup}
%\renewcommand*{\glsdohyperlink}[2]{%
% {\hypersetup{hidelinks=true}\hyperlink{#1}{#2}}}
\renewcommand*{\glsentryfmt}{%
\hypersetup{hidelinks}\glshyperlink[\glsgenentryfmt]{\glslabel}%
}
% Force text on right side, float on left side (does not work well) % Force text on right side, float on left side (does not work well)
\usepackage{sty/floatlefttextright} \usepackage{sty/floatlefttextright}
\renewcommand\maketitle{\include{titlepage}} \renewcommand\maketitle{\include{titlepage}}
\hypersetup{
hidelinks
}
\renewcommand*{\mkbibnamefamily}[1]{\textsc{#1}} \renewcommand*{\mkbibnamefamily}[1]{\textsc{#1}}
\renewcommand*{\mkbibnameprefix}[1]{\textsc{#1}} \renewcommand*{\mkbibnameprefix}[1]{\textsc{#1}}
@ -82,4 +116,37 @@
\fi \fi
} }
\usepackage{scrhack} \usepackage{scrhack}
% From S. Ivanov hdr preamble
\iffalse
\titleformat{\chapter}[frame]
{\itshape\color{primary}}
{\filright
\normalsize
\enspace Chapter \thechapter\enspace}
{10mm}
{\fontsize{35}{20}\selectfont\normalfont\bfseries\filright\hspace{1ex}}
\titleformat{\section}{\Large\normalfont\bfseries\color{primary}}{\thesection \hspace{1ex}}{1ex}{}
\titleformat{\subsection}{\large\normalfont\bfseries\color{primary}}{\thesubsection \hspace{1ex}}{1ex}{}
\titleformat{\subsubsection}{\normalsize\normalfont\bfseries\color{primary}}{}{1ex}{}
\newcommand{\changelocaltocdepth}[1]{%
\addtocontents{toc}{\protect\setcounter{tocdepth}{#1}}%
\setcounter{tocdepth}{#1}%
}
% Adapted to KOMA-Script (and to my preferences):
\renewcommand*{\sectionformat}{\thesection\filright\hspace{1ex}}
\addtokomafont{subsection}{\color{primary}}
\fi
\usepackage{titlesec}
\titleformat{\chapter}[frame]
{\itshape\color{primary}}
{\filright
\normalsize
\enspace Chapter \thechapter\enspace}
{10mm}
{\fontsize{35}{20}\selectfont\normalfont\bfseries\filright\hspace{1ex}}
\titleformat{\section}{\Large\normalfont\bfseries\color{primary}}{\thesection \hspace{1ex}}{1ex}{}
\titleformat{\subsection}{\large\normalfont\bfseries\color{primary}}{\thesubsection \hspace{1ex}}{1ex}{}
\titleformat{\subsubsection}{\normalsize\normalfont\bfseries\color{primary}}{}{1ex}{}