diff --git a/figures/lallemand2020-fig1_copy.pdf b/figures/lallemand2020-fig1_copy.pdf index 87c1d85..cb228de 100644 --- a/figures/lallemand2020-fig1_copy.pdf +++ b/figures/lallemand2020-fig1_copy.pdf @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:d18594e5de423fe3150a46b6b4c2d93fe7eba124102dff9b1f4b48bad1f775d9 -size 12301 +oid sha256:2e4346bc002b28b2bbfee3e0e2481f49fb986c98c6c99ce6c60c198328e28e71 +size 11671 diff --git a/figures/lallemand2020-fig1_copy.svg b/figures/lallemand2020-fig1_copy.svg index d0d0e19..a47d107 100644 --- a/figures/lallemand2020-fig1_copy.svg +++ b/figures/lallemand2020-fig1_copy.svg @@ -2,16 +2,16 @@ + style="stroke:#0050b4;stroke-opacity:1.0"> + style="stroke:#ff6600;stroke-opacity:1.0"> @@ -235,14 +235,14 @@ + style="stroke:#ff6600;stroke-opacity:1.0"> @@ -252,52 +252,52 @@ @@ -305,59 +305,59 @@ + style="stroke:#ff9f00;stroke-opacity:1.0"> @@ -365,45 +365,45 @@ + style="stroke:#ff6600;stroke-opacity:1.0"> whole genome duplication unequal crossing-over @@ -448,25 +448,25 @@ id="g61" transform="translate(0.52916663)"> @@ -477,16 +477,16 @@ id="g42" transform="translate(-0.95109567,-40.340409)"> @@ -494,11 +494,11 @@ id="g44" transform="translate(-0.95109567,-40.340409)"> @@ -506,13 +506,13 @@ transduplication tandem duplication @@ -632,90 +632,90 @@ id="g55" transform="matrix(0.78749593,0,0,0.85158924,43.038662,11.339079)"> DNA transposon retroduplication retrotransposon retrotransposon AAAA retrocopy segmental duplication + x="55" + y="199.99998" /> + x="159.04715" + y="199.99998" /> A B C D E F diff --git a/figures/tag-definition.pdf b/figures/tag-definition.pdf index 5c01e9e..94ea247 100644 --- a/figures/tag-definition.pdf +++ b/figures/tag-definition.pdf @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:48f558f347dd09f0625a02ce3109e02da5f429d61726687c694fd38584887da2 -size 17340 +oid sha256:728a1e19f098c931281a7c453b63d8734b04e1aa7b2b76e4fd0c03c0ba5dbfe6 +size 17348 diff --git a/figures/tag-definition.tex b/figures/tag-definition.tex index fc78ad0..5a6039c 100644 --- a/figures/tag-definition.tex +++ b/figures/tag-definition.tex @@ -6,7 +6,8 @@ \usepackage{tikz} \begin{document} -\definecolor{lammeblue}{HTML}{017d79} +\definecolor{lammegreen}{HTML}{017d79} +\definecolor{lammeblue}{HTML}{0050b4} \usetikzlibrary{positioning} \usetikzlibrary{decorations.pathreplacing} @@ -21,28 +22,28 @@ \draw[-,very thick] (-6,0) to (6,0); % Gene blocks \node[rectangle,fill=orange,minimum height=0.5cm, minimum width=1cm] (orange1) at (-5,0) {}; - \node[rectangle,fill=lammeblue,minimum height=0.5cm, minimum width=1cm] (green1) [right=of orange1] {}; + \node[rectangle,fill=lammegreen,minimum height=0.5cm, minimum width=1cm] (green1) [right=of orange1] {}; \node[rectangle,fill=red,minimum height=0.5cm, minimum width=1cm] (red1) [right=of green1] {}; - \node[rectangle,fill=lammeblue,minimum height=0.5cm, minimum width=1cm] (green2) [right=of red1] {}; - \node[rectangle,fill=lammeblue,minimum height=0.5cm, minimum width=1cm] (green3) [right=of green2] {}; - \node[rectangle,fill=lammeblue,minimum height=0.5cm, minimum width=1cm] (green4) [right=of green3] {}; - \node[rectangle,fill=blue,minimum height=0.5cm, minimum width=1cm] (blue1) [right=of green4] {}; - \node[rectangle,fill=blue,minimum height=0.5cm, minimum width=1cm] (blue2) [right=of blue1] {}; + \node[rectangle,fill=lammegreen,minimum height=0.5cm, minimum width=1cm] (green2) [right=of red1] {}; + \node[rectangle,fill=lammegreen,minimum height=0.5cm, minimum width=1cm] (green3) [right=of green2] {}; + \node[rectangle,fill=lammegreen,minimum height=0.5cm, minimum width=1cm] (green4) [right=of green3] {}; + \node[rectangle,fill=lammeblue,minimum height=0.5cm, minimum width=1cm] (blue1) [right=of green4] {}; + \node[rectangle,fill=lammeblue,minimum height=0.5cm, minimum width=1cm] (blue2) [right=of blue1] {}; \node[rectangle,fill=orange,minimum height=0.5cm, minimum width=1cm] (orange2) [right=of blue2] {}; % Homology links \draw[-,orange, bend left=40] (orange1) to coordinate[dot] node[nod] {$\mathrm{TAG}_7$} (orange2); - \draw[-,lammeblue,bend right=40] (green1) to (green2) + \draw[-,lammegreen,bend right=40] (green1) to (green2) (green2) to (green3) (green3) to (green4); - \draw[-,lammeblue,bend left=40] (green1) to (green3) + \draw[-,lammegreen,bend left=40] (green1) to (green3) (green1) to coordinate[dot] node[nod] {$\mathrm{TAG}_3$}(green4); - \draw[-,lammeblue,bend right=40] (green1) to (green2) + \draw[-,lammegreen,bend right=40] (green1) to (green2) (green2) to (green4); - \draw[-,blue, bend left=40] (blue1) to coordinate[dot] node[nod] {$\mathrm{TAG}_0$} (blue2); + \draw[-,lammeblue, bend left=40] (blue1) to coordinate[dot] node[nod] {$\mathrm{TAG}_0$} (blue2); \end{tikzpicture} \end{document} diff --git a/report.pdf b/report.pdf index fbcd519..7387eee 100644 --- a/report.pdf +++ b/report.pdf @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:159602494c9369ec8c88c0d353566b76b1fa3e7f549b1a9ba9f7acb24086090a -size 194024 +oid sha256:b82e2d35cf1b114f3a0fba618868444cc9e98b68aa5c08fc013992d8a51013cb +size 193269