From 6c0fdbf626349d2ebf4cc35cfc13d6a213d1ccc9 Mon Sep 17 00:00:00 2001
From: Samuel Ortion <samuel@ortion.fr>
Date: Fri, 19 Apr 2024 21:46:30 +0200
Subject: [PATCH] Add tag definition figure in SVG format

---
 report.org | 11 +++++++++++
 1 file changed, 11 insertions(+)

diff --git a/report.org b/report.org
index d36784f..b5ff238 100644
--- a/report.org
+++ b/report.org
@@ -189,6 +189,17 @@ The two main options being Snakemake and Nextflow. Snakemake is a python powered
 * Methodological approaches
 
 ** Duplicate gene detection method used in FTAG Finder
+#+begin_src emacs-lisp :exports results :results raw
+(setq fig:tag-definitions "#+label: fig:tag-definitions
+#+caption[Schematic representation of TAG definitions]: Schematic representation of TAG definitions. Several genes are represented on a linear chromosome. The red box represent a singleton gene. Orange boxes represent a TAG with two duplicate genes seperated by 7 other genes ($\\mathrm{TAG}_7$). Four green boxes constitute a TAG, the gene at the extremities are seperated by three genes ($\\mathrm{TAG}_3$). The two blue boxes represents a TAG with two genes next to each other ($\\mathrm{TAG}_0$). The bended edges represents the homology links between each pair of genes within a TAG.
+[[./figures/tag-definition.svg]]")
+
+(if (eq org-export-current-backend 'html)
+    fig:tag-definitions
+  ""
+  )
+#+end_src
+
 #+begin_export latex
 \fladdfig{
 	\includegraphics[width=.9\linewidth]{./figures/tag-definition.pdf}