GENIOMHE
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comparative-genomics-project
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20 Commits 1 Branch 0 Tags 1.9 MiB
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20 Commits

Author SHA1 Message Date
Samuel Ortion 5ad94110d7
Update project 2025-01-18 15:55:12 +01:00
Samuel Ortion 33e898da2e
Update KaKs workflow config 2025-01-18 15:53:11 +01:00
Samuel Ortion 6371ed0086
Add phylogenetic tree plot 2025-01-18 15:52:50 +01:00
Samuel Ortion e7e31798e9
Remove report 2025-01-18 15:51:26 +01:00
Samuel Ortion f2e3b168be
Add report 2025-01-18 15:38:59 +01:00
Samuel Ortion 5bc8f82d48
Add two missing species 2025-01-12 16:09:58 +01:00
Samuel Ortion fdf0b282b3
Renamed bash script 2025-01-08 14:11:30 +01:00
Samuel Ortion ee981b5a26
Update the families and TAGs pipeline 2025-01-08 13:15:15 +01:00
Samuel Ortion 444933efa2
Remove enviroment.yaml 2025-01-03 14:30:54 +01:00
Samuel Ortion 39deb9ff8d
Fix missing else clause 2024-12-30 16:52:41 +01:00
Samuel Ortion 18e9e4f56a
A workflow to count genes, duplicates, singletons and TAG 2024-12-30 11:19:34 +01:00
Samuel Ortion 3e17d75618
Moved families and TAG workflow to subfolder 2024-12-29 14:11:49 +01:00
Samuel Ortion 76852dfaf8
Add family size histogram 2024-12-29 14:06:22 +01:00
Samuel Ortion a75a0cb305
Update environment 2024-12-29 14:04:43 +01:00
Samuel Ortion 3e3c184153
Add a bash script to compute Ka/Ks 2024-12-24 11:31:02 +01:00
Samuel Ortion 5322a9686a
Add a workflow to extract Ka/Ks values 
Nextflow workflow, but is stuck with memory overflow.
 2024-12-24 11:28:30 +01:00
Samuel Ortion f766ebcc4a
Rust program to generate all gene pairs 2024-12-22 19:15:58 +01:00
Samuel Ortion 13f872cf10
Rust tagfinder 2024-11-08 12:42:59 +01:00
Samuel Ortion 53f6a60943
Update workflow 2024-11-04 11:37:20 +01:00
Samuel Ortion 0540e3699e
Initial Nextflow workflow 2024-10-28 10:46:05 +01:00