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A basic Open Reading Frame Finder (ORF-Finder) in Rust
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Samuel Ortion 272442c598
 Initial commit
2026-01-27 23:01:52 +01:00
src Initial commit 2026-01-27 23:01:52 +01:00
Cargo.toml Initial commit 2026-01-27 23:01:52 +01:00
README.md Initial commit 2026-01-27 23:01:52 +01:00

README.md

ORF-Finder-rs

A basic tool to search for Open Reading Frames from a FASTA file of DNA sequences.

Features

Print the sequence with space-separated codons on the 6 codon phases. Colorize start and stop codon for the terminal.

Install

Requirements

  • rust
  • cargo with rust crates:
    • clap
    • colored

Build

Clone the git repository:

git clone https://forge.s1gm4.eu/sortion/orffinder-rs.git
cd orffinder-rs

cargo build --release

Run

./target/release/orffinder <FASTA>